Variant report

Variant	rs17012312
Chromosome Location	chr4:128226006-128226007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10013046	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10518511	0.86[EUR][1000 genomes]
rs10518514	0.86[EUR][1000 genomes]
rs10518515	0.86[EUR][1000 genomes]
rs10518517	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10518520	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11098918	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11098919	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12649568	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13134996	0.87[EUR][1000 genomes]
rs1443067	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17012138	0.86[EUR][1000 genomes]
rs17012147	0.86[EUR][1000 genomes]
rs17012149	0.86[EUR][1000 genomes]
rs17012314	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17012316	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17012372	0.86[EUR][1000 genomes]
rs1822359	0.86[EUR][1000 genomes]
rs1871736	0.86[EUR][1000 genomes]
rs28493833	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28798206	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35767037	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4270600	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4274865	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4306971	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56786523	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57081812	0.86[EUR][1000 genomes]
rs57701757	0.86[EUR][1000 genomes]
rs58916718	0.86[EUR][1000 genomes]
rs59218603	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59451076	0.86[EUR][1000 genomes]
rs59789711	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61513058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534614	0.87[EUR][1000 genomes]
rs6831453	0.86[EUR][1000 genomes]
rs72925363	0.86[EUR][1000 genomes]
rs72929404	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72929408	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72929409	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72929411	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72929490	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs755815	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7657020	0.86[EUR][1000 genomes]
rs7660722	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs920737	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128225000-128226800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:128225200-128226400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:128225200-128226600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:128225200-128226600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:128225200-128226600	Enhancers	NHDF-Ad	bronchial
6	chr4:128226000-128226600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:128226000-128226600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:128226000-128229400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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