Variant report

Variant	rs59789711
Chromosome Location	chr4:128154578-128154579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10013046	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10518511	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10518514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10518515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10518517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518520	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098919	0.98[ASN][1000 genomes]
rs1155135	0.84[ASN][1000 genomes]
rs11939315	0.86[EUR][1000 genomes]
rs12639943	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12649215	0.95[AMR][1000 genomes]
rs12649568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12651138	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1443067	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17011996	0.91[AMR][1000 genomes]
rs17012000	0.91[AMR][1000 genomes]
rs17012020	0.91[AMR][1000 genomes]
rs17012036	0.91[AMR][1000 genomes]
rs17012038	0.91[AMR][1000 genomes]
rs17012040	0.91[AMR][1000 genomes]
rs17012078	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012097	0.86[EUR][1000 genomes]
rs17012138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17012147	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17012149	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17012312	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17012314	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17012316	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17012372	1.00[EUR][1000 genomes]
rs17012378	0.86[EUR][1000 genomes]
rs1822359	1.00[EUR][1000 genomes]
rs1871736	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493833	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28798206	0.98[ASN][1000 genomes]
rs35767037	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4270600	0.98[ASN][1000 genomes]
rs4274865	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4306971	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56786523	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56822169	0.91[AMR][1000 genomes]
rs57081812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57701757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58916718	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59218603	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59451076	1.00[EUR][1000 genomes]
rs61513058	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6831453	1.00[EUR][1000 genomes]
rs72925363	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929404	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72929408	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72929409	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72929411	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72929490	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72929494	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs755815	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7657020	1.00[EUR][1000 genomes]
rs7660722	0.80[ASN][1000 genomes]
rs920737	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128151600-128160400	Weak transcription	Fetal Stomach	stomach
2	chr4:128152200-128157800	Weak transcription	Fetal Lung	lung
3	chr4:128153400-128154800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:128153800-128155000	Weak transcription	H1 Cell Line	embryonic stem cell

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