Variant report

Variant	rs12649215
Chromosome Location	chr4:128040886-128040887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10518511	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10518514	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10518515	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10518517	0.95[AMR][1000 genomes]
rs10518520	0.83[AMR][1000 genomes]
rs11098918	0.95[AMR][1000 genomes]
rs1155135	0.90[ASN][1000 genomes]
rs11939315	0.99[ASN][1000 genomes]
rs12639943	0.85[AMR][1000 genomes]
rs12649568	0.95[AMR][1000 genomes]
rs12651138	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17011996	0.95[AMR][1000 genomes]
rs17012000	0.95[AMR][1000 genomes]
rs17012020	0.95[AMR][1000 genomes]
rs17012036	0.95[AMR][1000 genomes]
rs17012038	0.95[AMR][1000 genomes]
rs17012040	0.95[AMR][1000 genomes]
rs17012078	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17012097	1.00[ASN][1000 genomes]
rs17012138	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17012147	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17012149	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17012314	0.80[AMR][1000 genomes]
rs17012316	0.80[AMR][1000 genomes]
rs1871736	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4274865	0.80[AMR][1000 genomes]
rs56786523	0.83[AMR][1000 genomes]
rs56822169	0.95[AMR][1000 genomes]
rs57081812	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57701757	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58916718	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59218603	0.80[AMR][1000 genomes]
rs59789711	0.95[AMR][1000 genomes]
rs72925363	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs755815	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128038600-128042000	Weak transcription	Fetal Brain Male	brain
2	chr4:128039200-128042200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:128040400-128041600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:128040400-128041600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:128040400-128043800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:128040600-128041400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:128040600-128041600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:128040600-128041600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:128040600-128044400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:128040600-128046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:128040800-128041400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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