Variant report

Variant	rs10518511
Chromosome Location	chr4:128018110-128018111
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MFSD8-3	chr4:128018046-128018414	ENSG00000248491

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10013046	0.86[EUR][1000 genomes]
rs10518514	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10518515	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10518517	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10518520	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11098918	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1155135	0.90[ASN][1000 genomes]
rs11939315	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639943	0.83[EUR][1000 genomes]
rs12649215	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12649568	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12651138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1443067	0.86[EUR][1000 genomes]
rs17011996	0.86[AMR][1000 genomes]
rs17012000	0.86[AMR][1000 genomes]
rs17012020	0.86[AMR][1000 genomes]
rs17012036	0.86[AMR][1000 genomes]
rs17012038	0.86[AMR][1000 genomes]
rs17012040	0.86[AMR][1000 genomes]
rs17012078	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012097	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012138	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17012147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012149	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012312	0.86[EUR][1000 genomes]
rs17012314	1.00[EUR][1000 genomes]
rs17012316	1.00[EUR][1000 genomes]
rs1871736	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28493833	0.86[EUR][1000 genomes]
rs35767037	0.86[EUR][1000 genomes]
rs4274865	1.00[EUR][1000 genomes]
rs4306971	0.86[EUR][1000 genomes]
rs56786523	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56822169	0.86[AMR][1000 genomes]
rs57081812	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57642585	0.88[AFR][1000 genomes]
rs57701757	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58127671	0.91[AFR][1000 genomes]
rs58916718	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58944195	1.00[AFR][1000 genomes]
rs59218603	1.00[EUR][1000 genomes]
rs59789711	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60943407	1.00[AFR][1000 genomes]
rs61513058	0.86[EUR][1000 genomes]
rs72925318	1.00[AFR][1000 genomes]
rs72925319	1.00[AFR][1000 genomes]
rs72925320	1.00[AFR][1000 genomes]
rs72925322	1.00[AFR][1000 genomes]
rs72925325	1.00[AFR][1000 genomes]
rs72925343	1.00[AFR][1000 genomes]
rs72925354	0.95[AFR][1000 genomes]
rs72925360	0.95[AFR][1000 genomes]
rs72925362	0.95[AFR][1000 genomes]
rs72925363	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72925366	0.91[AFR][1000 genomes]
rs72925368	0.86[AFR][1000 genomes]
rs72925375	0.86[AFR][1000 genomes]
rs72925383	0.86[AFR][1000 genomes]
rs72929404	0.86[EUR][1000 genomes]
rs72929408	0.86[EUR][1000 genomes]
rs72929409	0.86[EUR][1000 genomes]
rs72929411	0.86[EUR][1000 genomes]
rs72929490	0.86[EUR][1000 genomes]
rs72929494	0.86[EUR][1000 genomes]
rs755815	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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