Variant report
| Variant | rs72925383 |
|---|---|
| Chromosome Location | chr4:128097015-128097016 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:128093003..128095000-chr4:128096462..128098842,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10518511 | 0.86[AFR][1000 genomes] |
| rs57642585 | 0.84[AFR][1000 genomes] |
| rs58127671 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58916718 | 0.95[AFR][1000 genomes] |
| rs58944195 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60943407 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925318 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925319 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925320 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925322 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925325 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925343 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925354 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925360 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925362 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925363 | 0.91[AFR][1000 genomes] |
| rs72925366 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925368 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925375 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72925376 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879914 | chr4:128005362-128123638 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:128096200-128099600 | Weak transcription | Colon Smooth Muscle | Colon |
