Variant report

Variant	rs72925322
Chromosome Location	chr4:128006822-128006823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10518511	1.00[AFR][1000 genomes]
rs57642585	0.88[AFR][1000 genomes]
rs58127671	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58916718	0.91[AFR][1000 genomes]
rs58944195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60943407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925354	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925360	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925363	0.95[AFR][1000 genomes]
rs72925366	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925368	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925375	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72925376	1.00[AMR][1000 genomes]
rs72925383	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353295	chr4:127994396-128017617	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128004800-128007600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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