Variant report

Variant	rs58916718
Chromosome Location	chr4:128060359-128060360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10013046	0.86[EUR][1000 genomes]
rs10518511	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10518514	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518515	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518517	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10518520	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11098918	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11098919	0.81[ASN][1000 genomes]
rs1155135	0.95[ASN][1000 genomes]
rs11939315	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12639943	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12649215	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12649568	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12651138	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443067	0.86[EUR][1000 genomes]
rs17011996	0.82[AMR][1000 genomes]
rs17012000	0.82[AMR][1000 genomes]
rs17012020	0.82[AMR][1000 genomes]
rs17012036	0.82[AMR][1000 genomes]
rs17012038	0.82[AMR][1000 genomes]
rs17012040	0.82[AMR][1000 genomes]
rs17012078	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012097	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17012147	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17012149	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17012312	0.86[EUR][1000 genomes]
rs17012314	1.00[EUR][1000 genomes]
rs17012316	1.00[EUR][1000 genomes]
rs1822359	1.00[EUR][1000 genomes]
rs1871736	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28493833	0.86[EUR][1000 genomes]
rs28798206	0.81[ASN][1000 genomes]
rs35767037	0.86[EUR][1000 genomes]
rs4270600	0.81[ASN][1000 genomes]
rs4274865	1.00[EUR][1000 genomes]
rs4306971	0.86[EUR][1000 genomes]
rs56786523	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56822169	0.82[AMR][1000 genomes]
rs57081812	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57642585	0.88[AFR][1000 genomes]
rs57701757	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58127671	1.00[AFR][1000 genomes]
rs58944195	0.91[AFR][1000 genomes]
rs59218603	1.00[EUR][1000 genomes]
rs59789711	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60943407	0.91[AFR][1000 genomes]
rs61513058	0.86[EUR][1000 genomes]
rs6831453	1.00[EUR][1000 genomes]
rs72925318	0.91[AFR][1000 genomes]
rs72925319	0.91[AFR][1000 genomes]
rs72925320	0.91[AFR][1000 genomes]
rs72925322	0.91[AFR][1000 genomes]
rs72925325	0.91[AFR][1000 genomes]
rs72925343	0.91[AFR][1000 genomes]
rs72925354	0.95[AFR][1000 genomes]
rs72925360	0.95[AFR][1000 genomes]
rs72925362	0.95[AFR][1000 genomes]
rs72925363	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72925366	1.00[AFR][1000 genomes]
rs72925368	0.95[AFR][1000 genomes]
rs72925375	0.95[AFR][1000 genomes]
rs72925383	0.95[AFR][1000 genomes]
rs72929404	0.86[EUR][1000 genomes]
rs72929408	0.86[EUR][1000 genomes]
rs72929409	0.86[EUR][1000 genomes]
rs72929411	0.86[EUR][1000 genomes]
rs72929490	0.86[EUR][1000 genomes]
rs72929494	0.86[EUR][1000 genomes]
rs755815	1.00[EUR][1000 genomes]
rs7657020	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128053400-128061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:128059400-128060600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:128060000-128061000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:128060000-128061200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:128060000-128062600	Weak transcription	HSMM	muscle
6	chr4:128060000-128063000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:128060200-128062600	Weak transcription	HSMMtube	muscle

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