Variant report

Variant	rs1871736
Chromosome Location	chr4:128023469-128023470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10013046	0.86[EUR][1000 genomes]
rs10518511	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518514	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10518515	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10518517	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10518520	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11098918	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1155135	0.90[ASN][1000 genomes]
rs11939315	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639943	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12649215	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12649568	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12651138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1443067	0.86[EUR][1000 genomes]
rs17011996	0.95[AMR][1000 genomes]
rs17012000	0.95[AMR][1000 genomes]
rs17012020	0.95[AMR][1000 genomes]
rs17012036	0.95[AMR][1000 genomes]
rs17012038	0.95[AMR][1000 genomes]
rs17012040	0.95[AMR][1000 genomes]
rs17012078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012097	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012138	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17012147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012312	0.86[EUR][1000 genomes]
rs17012314	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012316	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1910441	0.86[AMR][1000 genomes]
rs28493833	0.86[EUR][1000 genomes]
rs35767037	0.86[EUR][1000 genomes]
rs4274865	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4306971	0.86[EUR][1000 genomes]
rs56786523	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56822169	0.95[AMR][1000 genomes]
rs57081812	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57701757	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58838664	0.82[AMR][1000 genomes]
rs58916718	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59218603	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59789711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61513058	0.86[EUR][1000 genomes]
rs72925363	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72929404	0.86[EUR][1000 genomes]
rs72929408	0.86[EUR][1000 genomes]
rs72929409	0.86[EUR][1000 genomes]
rs72929411	0.86[EUR][1000 genomes]
rs72929490	0.86[EUR][1000 genomes]
rs72929494	0.86[EUR][1000 genomes]
rs755815	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128019000-128024200	Weak transcription	Fetal Brain Male	brain
2	chr4:128023200-128025800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links