Variant report

Variant	rs72929408
Chromosome Location	chr4:128168796-128168797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10013046	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518511	0.86[EUR][1000 genomes]
rs10518514	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10518515	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10518517	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10518520	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098918	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098919	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12639943	0.83[ASN][1000 genomes]
rs12649568	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12651138	0.86[EUR][1000 genomes]
rs13134996	0.87[EUR][1000 genomes]
rs1443067	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012078	0.86[EUR][1000 genomes]
rs17012138	0.86[EUR][1000 genomes]
rs17012147	0.86[EUR][1000 genomes]
rs17012149	0.86[EUR][1000 genomes]
rs17012312	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17012314	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17012316	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17012372	0.86[EUR][1000 genomes]
rs1822359	0.86[EUR][1000 genomes]
rs1871736	0.86[EUR][1000 genomes]
rs28493833	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28798206	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35767037	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4270600	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4274865	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4306971	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56786523	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57081812	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57701757	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58916718	0.86[EUR][1000 genomes]
rs59218603	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59451076	0.86[EUR][1000 genomes]
rs59789711	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61513058	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6534614	0.87[EUR][1000 genomes]
rs6831453	0.86[EUR][1000 genomes]
rs72925363	0.86[EUR][1000 genomes]
rs72929404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929409	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72929490	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72929494	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs755815	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7657020	0.86[EUR][1000 genomes]
rs7660722	0.87[ASN][1000 genomes]
rs920737	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128162600-128170000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:128168200-128168800	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links