Variant report

Variant	rs4306971
Chromosome Location	chr4:128170736-128170737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10013046	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518511	0.86[EUR][1000 genomes]
rs10518514	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10518515	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10518517	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10518520	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11098918	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098919	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12639943	0.82[ASN][1000 genomes]
rs12649568	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12651138	0.86[EUR][1000 genomes]
rs13134996	0.87[EUR][1000 genomes]
rs1443067	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17012078	0.86[EUR][1000 genomes]
rs17012138	0.86[EUR][1000 genomes]
rs17012147	0.86[EUR][1000 genomes]
rs17012149	0.86[EUR][1000 genomes]
rs17012312	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012314	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17012316	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17012372	0.86[EUR][1000 genomes]
rs1822359	0.86[EUR][1000 genomes]
rs1871736	0.86[EUR][1000 genomes]
rs28493833	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28798206	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35767037	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4270600	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4274865	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56786523	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57081812	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57701757	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58916718	0.86[EUR][1000 genomes]
rs59218603	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59451076	0.86[EUR][1000 genomes]
rs59789711	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61513058	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6534614	0.87[EUR][1000 genomes]
rs6831453	0.86[EUR][1000 genomes]
rs72925363	0.86[EUR][1000 genomes]
rs72929404	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72929408	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72929409	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72929411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929490	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72929494	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs755815	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657020	0.86[EUR][1000 genomes]
rs7660722	0.88[ASN][1000 genomes]
rs920737	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128170000-128171000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:128170000-128171000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:128170000-128171000	Enhancers	Osteobl	bone
4	chr4:128170000-128172800	Enhancers	HMEC	breast
5	chr4:128170200-128170800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:128170200-128170800	Enhancers	NHDF-Ad	bronchial
7	chr4:128170200-128171200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:128170400-128171000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:128170600-128171000	Enhancers	Muscle Satellite Cultured Cells	--

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