Variant report

Variant	rs7699873
Chromosome Location	chr4:128045081-128045082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1155135	0.80[AFR][1000 genomes]
rs11937459	0.81[EUR][1000 genomes]
rs13107744	0.80[EUR][1000 genomes]
rs1383517	0.80[EUR][1000 genomes]
rs1480911	0.80[EUR][1000 genomes]
rs1531684	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1531685	0.80[EUR][1000 genomes]
rs2054560	0.81[EUR][1000 genomes]
rs2170268	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6841506	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128040600-128046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:128042000-128046000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:128042000-128046200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:128042000-128047600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:128042200-128046400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:128042400-128045400	Weak transcription	Fetal Brain Male	brain
7	chr4:128044800-128045800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:128045000-128046400	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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