Variant report

Variant	rs10518510
Chromosome Location	chr4:128069769-128069770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1026824	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1155135	0.91[AFR][1000 genomes]
rs11937459	0.87[AFR][1000 genomes]
rs12649107	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12649882	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1471556	0.94[EUR][1000 genomes]
rs1531684	0.91[AFR][1000 genomes]
rs2054560	0.85[AFR][1000 genomes]
rs2127817	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2127818	0.94[EUR][1000 genomes]
rs2170268	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10518510	C4orf33	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128069400-128069800	Enhancers	Stomach Smooth Muscle	stomach
2	chr4:128069600-128069800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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