Variant report

Variant	rs1471556
Chromosome Location	chr4:128096615-128096616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10025761	0.81[ASN][1000 genomes]
rs10033566	0.81[ASN][1000 genomes]
rs1026824	0.88[EUR][1000 genomes]
rs10518510	0.94[EUR][1000 genomes]
rs12499978	0.81[ASN][1000 genomes]
rs12503648	0.81[ASN][1000 genomes]
rs12507660	0.81[ASN][1000 genomes]
rs12509041	0.81[ASN][1000 genomes]
rs12649107	0.96[EUR][1000 genomes]
rs12649882	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480898	0.81[ASN][1000 genomes]
rs17291532	0.81[ASN][1000 genomes]
rs1871737	0.81[ASN][1000 genomes]
rs1871738	0.81[ASN][1000 genomes]
rs2127817	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2127818	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659822	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1471556	C4orf33	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128096200-128099600	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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