Variant report

Variant	rs12649107
Chromosome Location	chr4:128104744-128104745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1026824	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10518510	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1155135	0.87[AFR][1000 genomes]
rs11937459	0.83[AFR][1000 genomes]
rs12649882	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1471556	0.96[EUR][1000 genomes]
rs1531684	0.86[AFR][1000 genomes]
rs2054560	0.81[AFR][1000 genomes]
rs2127817	0.88[EUR][1000 genomes]
rs2127818	0.96[EUR][1000 genomes]
rs2170268	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128104400-128104800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr4:128104600-128105400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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