Variant report

Variant	rs3106205
Chromosome Location	chr4:127970383-127970384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10002403	1.00[ASN][1000 genomes]
rs10010552	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023151	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029217	1.00[ASN][1000 genomes]
rs1031943	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098912	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155135	0.84[EUR][1000 genomes]
rs11937459	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511473	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107744	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125153	1.00[ASN][1000 genomes]
rs1372967	1.00[ASN][1000 genomes]
rs1383517	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383519	1.00[ASN][1000 genomes]
rs1383522	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480901	1.00[ASN][1000 genomes]
rs1480902	1.00[ASN][1000 genomes]
rs1480907	1.00[ASN][1000 genomes]
rs1480908	1.00[ASN][1000 genomes]
rs1480911	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480913	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531684	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531685	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054560	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127816	1.00[ASN][1000 genomes]
rs2170268	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340450	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240280	1.00[ASN][1000 genomes]
rs4336239	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4365744	1.00[ASN][1000 genomes]
rs4833371	1.00[ASN][1000 genomes]
rs4834182	1.00[ASN][1000 genomes]
rs4834183	1.00[ASN][1000 genomes]
rs4834185	1.00[ASN][1000 genomes]
rs4834187	1.00[ASN][1000 genomes]
rs6534599	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841506	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844804	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852817	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664962	1.00[ASN][1000 genomes]
rs7668919	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674918	1.00[ASN][1000 genomes]
rs7691994	1.00[ASN][1000 genomes]
rs7692034	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127965200-127970800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:127965800-127971200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:127966000-127971000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:127966600-127972800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:127967000-127976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:127967600-127970400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:127967600-127976600	Weak transcription	NHDF-Ad	bronchial
8	chr4:127967600-127982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:127968400-127970400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:127969400-127971200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:127969800-127971000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:127969800-127971200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr4:127969800-127971200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:127970200-127971000	Enhancers	NH-A	brain
15	chr4:127970200-127971400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:127970200-127976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:127970200-127976600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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