Variant report

Variant	rs1480907
Chromosome Location	chr4:128117928-128117929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128114466..128117078-chr4:128117654..128119344,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10002403	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010552	1.00[ASN][1000 genomes]
rs10023151	1.00[ASN][1000 genomes]
rs10029217	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031943	1.00[ASN][1000 genomes]
rs11098912	1.00[ASN][1000 genomes]
rs11937459	1.00[ASN][1000 genomes]
rs12511473	1.00[ASN][1000 genomes]
rs13107744	1.00[ASN][1000 genomes]
rs13111334	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13125153	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372967	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383517	1.00[ASN][1000 genomes]
rs1383518	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1383519	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383522	1.00[ASN][1000 genomes]
rs1480901	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480902	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480911	1.00[ASN][1000 genomes]
rs1480913	1.00[ASN][1000 genomes]
rs1531684	1.00[ASN][1000 genomes]
rs1531685	1.00[ASN][1000 genomes]
rs2054560	1.00[ASN][1000 genomes]
rs2083754	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170268	1.00[ASN][1000 genomes]
rs3106205	1.00[ASN][1000 genomes]
rs340443	1.00[ASN][1000 genomes]
rs340450	1.00[ASN][1000 genomes]
rs4240280	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336239	1.00[ASN][1000 genomes]
rs4365744	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512008	0.89[AFR][1000 genomes]
rs4833371	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834185	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834187	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534599	1.00[ASN][1000 genomes]
rs6534612	1.00[ASN][1000 genomes]
rs6841506	1.00[ASN][1000 genomes]
rs6844804	1.00[ASN][1000 genomes]
rs6852817	1.00[ASN][1000 genomes]
rs7664962	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668919	1.00[ASN][1000 genomes]
rs7674918	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691994	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692034	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128116800-128118000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:128117000-128118600	Enhancers	Fetal Stomach	stomach
3	chr4:128117800-128118000	Enhancers	Gastric	stomach
4	chr4:128117800-128118200	Enhancers	Stomach Smooth Muscle	stomach
5	chr4:128117800-128118400	Enhancers	Fetal Muscle Trunk	muscle
6	chr4:128117800-128118400	Enhancers	Fetal Muscle Leg	muscle
7	chr4:128117800-128118400	Enhancers	Left Ventricle	heart
8	chr4:128117800-128118400	Bivalent Enhancer	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links