Variant report

Variant	rs2083754
Chromosome Location	chr4:128221293-128221294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10002403	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010552	1.00[ASN][1000 genomes]
rs10023151	1.00[ASN][1000 genomes]
rs10029217	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098912	1.00[ASN][1000 genomes]
rs11934686	1.00[ASN][1000 genomes]
rs11937459	1.00[ASN][1000 genomes]
rs12499503	0.81[EUR][1000 genomes]
rs12511473	1.00[ASN][1000 genomes]
rs13107744	1.00[ASN][1000 genomes]
rs13111334	0.88[EUR][1000 genomes]
rs13125153	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372967	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383517	1.00[ASN][1000 genomes]
rs1383518	0.87[EUR][1000 genomes]
rs1383519	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480901	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480902	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480907	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480908	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480911	1.00[ASN][1000 genomes]
rs1531684	1.00[ASN][1000 genomes]
rs1531685	1.00[ASN][1000 genomes]
rs17012435	1.00[ASN][1000 genomes]
rs17012441	1.00[ASN][1000 genomes]
rs2054560	1.00[ASN][1000 genomes]
rs2127816	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170268	1.00[ASN][1000 genomes]
rs36125125	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4240280	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336239	1.00[ASN][1000 genomes]
rs4365744	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833371	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834182	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834183	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834185	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834187	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57074124	1.00[ASN][1000 genomes]
rs61414660	1.00[ASN][1000 genomes]
rs6534599	1.00[ASN][1000 genomes]
rs6534612	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6820668	1.00[ASN][1000 genomes]
rs6841506	1.00[ASN][1000 genomes]
rs6852817	1.00[ASN][1000 genomes]
rs72680077	1.00[ASN][1000 genomes]
rs72680078	1.00[ASN][1000 genomes]
rs72680096	1.00[ASN][1000 genomes]
rs72680097	1.00[ASN][1000 genomes]
rs7664962	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668919	1.00[ASN][1000 genomes]
rs7674918	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691994	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692034	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128215600-128222600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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