Variant report
| Variant | rs36125125 |
|---|---|
| Chromosome Location | chr4:128344289-128344290 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:128343789..128345913-chr4:128553991..128556813,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164066 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10002403 | 1.00[ASN][1000 genomes] |
| rs10029217 | 1.00[ASN][1000 genomes] |
| rs11934686 | 1.00[ASN][1000 genomes] |
| rs13125153 | 1.00[ASN][1000 genomes] |
| rs1372967 | 1.00[ASN][1000 genomes] |
| rs17012435 | 1.00[ASN][1000 genomes] |
| rs17012441 | 1.00[ASN][1000 genomes] |
| rs2083754 | 1.00[ASN][1000 genomes] |
| rs4240280 | 1.00[ASN][1000 genomes] |
| rs4365744 | 1.00[ASN][1000 genomes] |
| rs4833371 | 1.00[ASN][1000 genomes] |
| rs4834185 | 1.00[ASN][1000 genomes] |
| rs4834187 | 1.00[ASN][1000 genomes] |
| rs57074124 | 1.00[ASN][1000 genomes] |
| rs61414660 | 1.00[ASN][1000 genomes] |
| rs6534612 | 1.00[ASN][1000 genomes] |
| rs6820668 | 1.00[ASN][1000 genomes] |
| rs72680077 | 1.00[ASN][1000 genomes] |
| rs72680078 | 1.00[ASN][1000 genomes] |
| rs72680096 | 1.00[ASN][1000 genomes] |
| rs72680097 | 1.00[ASN][1000 genomes] |
| rs7664962 | 1.00[ASN][1000 genomes] |
| rs7666433 | 1.00[AFR][1000 genomes] |
| rs7674918 | 1.00[ASN][1000 genomes] |
| rs7696963 | 0.86[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879915 | chr4:128167093-129150590 | Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029214 | chr4:128292215-128683123 | Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv537247 | chr4:128292215-128683123 | Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv817326 | chr4:128292216-128915201 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:128344200-128344400 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
