Variant report

Variant	rs6534612
Chromosome Location	chr4:128245725-128245726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10002403	1.00[ASN][1000 genomes]
rs10029217	1.00[ASN][1000 genomes]
rs11098912	1.00[ASN][1000 genomes]
rs11934686	1.00[ASN][1000 genomes]
rs11937459	1.00[ASN][1000 genomes]
rs12511473	1.00[ASN][1000 genomes]
rs13125153	1.00[ASN][1000 genomes]
rs1372967	1.00[ASN][1000 genomes]
rs1383519	1.00[ASN][1000 genomes]
rs1480901	1.00[ASN][1000 genomes]
rs1480902	1.00[ASN][1000 genomes]
rs1480907	1.00[ASN][1000 genomes]
rs1480908	1.00[ASN][1000 genomes]
rs1480911	1.00[ASN][1000 genomes]
rs1531684	1.00[ASN][1000 genomes]
rs1531685	1.00[ASN][1000 genomes]
rs17012435	1.00[ASN][1000 genomes]
rs17012441	1.00[ASN][1000 genomes]
rs2054560	1.00[ASN][1000 genomes]
rs2083754	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2127816	1.00[ASN][1000 genomes]
rs2170268	1.00[ASN][1000 genomes]
rs36125125	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs4240280	1.00[ASN][1000 genomes]
rs4336239	1.00[ASN][1000 genomes]
rs4365744	1.00[ASN][1000 genomes]
rs4833371	1.00[ASN][1000 genomes]
rs4834182	1.00[ASN][1000 genomes]
rs4834183	1.00[ASN][1000 genomes]
rs4834185	1.00[ASN][1000 genomes]
rs4834187	1.00[ASN][1000 genomes]
rs57074124	1.00[ASN][1000 genomes]
rs61414660	1.00[ASN][1000 genomes]
rs6534599	1.00[ASN][1000 genomes]
rs6820668	1.00[ASN][1000 genomes]
rs72680077	1.00[ASN][1000 genomes]
rs72680078	1.00[ASN][1000 genomes]
rs72680096	1.00[ASN][1000 genomes]
rs72680097	1.00[ASN][1000 genomes]
rs7664962	1.00[ASN][1000 genomes]
rs7668919	1.00[ASN][1000 genomes]
rs7674918	1.00[ASN][1000 genomes]
rs7691994	1.00[ASN][1000 genomes]
rs7692034	1.00[ASN][1000 genomes]
rs7696963	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128244600-128246000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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