Variant report

Variant	rs7692034
Chromosome Location	chr4:128121499-128121500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10002403	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010552	1.00[ASN][1000 genomes]
rs10023151	1.00[ASN][1000 genomes]
rs10029217	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031943	1.00[ASN][1000 genomes]
rs11098912	1.00[ASN][1000 genomes]
rs11937459	1.00[ASN][1000 genomes]
rs12511473	1.00[ASN][1000 genomes]
rs13107744	1.00[ASN][1000 genomes]
rs13111334	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13125153	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372967	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383517	1.00[ASN][1000 genomes]
rs1383518	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1383519	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383522	1.00[ASN][1000 genomes]
rs1480901	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480902	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480907	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480911	1.00[ASN][1000 genomes]
rs1480913	1.00[ASN][1000 genomes]
rs1531684	1.00[ASN][1000 genomes]
rs1531685	1.00[ASN][1000 genomes]
rs2054560	1.00[ASN][1000 genomes]
rs2083754	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127816	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170268	1.00[ASN][1000 genomes]
rs3106205	1.00[ASN][1000 genomes]
rs340443	1.00[ASN][1000 genomes]
rs340450	1.00[ASN][1000 genomes]
rs4240280	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336239	1.00[ASN][1000 genomes]
rs4365744	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512008	0.87[AFR][1000 genomes]
rs4833371	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834182	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834183	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834185	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834187	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534599	1.00[ASN][1000 genomes]
rs6534612	1.00[ASN][1000 genomes]
rs6841506	1.00[ASN][1000 genomes]
rs6844804	1.00[ASN][1000 genomes]
rs6852817	1.00[ASN][1000 genomes]
rs7664962	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668919	1.00[ASN][1000 genomes]
rs7674918	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691994	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128121200-128121600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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