Variant report

Variant	rs653468
Chromosome Location	chr6:139842563-139842564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139842023..139844325-chr6:139853923..139855853,2	K562	blood:
2	chr6:139840112..139843143-chr6:139848292..139853200,4	K562	blood:
3	chr6:139835055..139838753-chr6:139840846..139843120,3	K562	blood:
4	chr6:139841309..139844130-chr6:140279796..140281485,2	K562	blood:
5	chr6:139799364..139800954-chr6:139840362..139842649,2	K562	blood:
6	chr6:139841605..139843339-chr6:139847235..139850097,2	MCF-7	breast:
7	chr6:139836503..139839268-chr6:139841620..139844665,3	K562	blood:

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12205386	1.00[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139837000-139843600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:139837000-139843600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:139837000-139843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:139837000-139843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:139838000-139844000	Weak transcription	Hela-S3	cervix
7	chr6:139840000-139842600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:139840400-139844400	Enhancers	NHEK	skin
9	chr6:139840400-139844800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:139840800-139855200	Weak transcription	Pancreas	Pancrea
11	chr6:139841000-139842600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:139841000-139844800	Enhancers	HMEC	breast
13	chr6:139841000-139854600	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:139841400-139843400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:139841400-139843600	Weak transcription	Adipose Nuclei	Adipose
16	chr6:139841400-139843600	Weak transcription	Esophagus	oesophagus
17	chr6:139841400-139843600	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:139841400-139843600	Weak transcription	Lung	lung
19	chr6:139841400-139843600	Weak transcription	Osteobl	bone
20	chr6:139841400-139843800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:139841600-139843400	Weak transcription	Placenta	Placenta
22	chr6:139841600-139843600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:139841600-139843600	Weak transcription	Fetal Heart	heart
24	chr6:139841600-139849400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:139841600-139853000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:139841800-139842800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:139841800-139842800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr6:139841800-139843600	Weak transcription	NHDF-Ad	bronchial
29	chr6:139842000-139846200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:139842200-139842800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:139842400-139842600	Enhancers	HSMMtube	muscle

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