Variant report

Variant	rs12205386
Chromosome Location	chr6:139837171-139837172
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694875..139697306-chr6:139836159..139839254,4	K562	blood:
2	chr6:139832742..139835243-chr6:139835600..139839246,3	K562	blood:
3	chr6:139693313..139697618-chr6:139836425..139839153,5	K562	blood:
4	chr6:139836503..139839268-chr6:139841620..139844665,3	K562	blood:
5	chr6:139835055..139838753-chr6:139840846..139843120,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17068794	0.80[ASW][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs653468	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139836000-139837200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:139836000-139837800	Enhancers	K562	blood
4	chr6:139836000-139838000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:139836200-139837200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:139836200-139837400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:139836400-139837200	Enhancers	Adipose Nuclei	Adipose
8	chr6:139836400-139837800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:139836800-139837800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:139836800-139838000	Enhancers	NH-A	brain
11	chr6:139837000-139838800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:139837000-139839200	Weak transcription	Fetal Heart	heart
13	chr6:139837000-139840000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:139837000-139840000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:139837000-139840000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:139837000-139840400	Weak transcription	HSMMtube	muscle
17	chr6:139837000-139840600	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:139837000-139840600	Weak transcription	NHDF-Ad	bronchial
19	chr6:139837000-139840600	Weak transcription	Osteobl	bone
20	chr6:139837000-139843600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:139837000-139843600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:139837000-139843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:139837000-139843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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