Variant report

Variant	rs17068794
Chromosome Location	chr6:139832151-139832152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11963759	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11965564	1.00[CEU][hapmap]
rs11970753	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12205386	0.80[ASW][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs17068816	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6907432	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6916642	1.00[CEU][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1026819	chr6:139813809-139834012	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139829200-139832800	Enhancers	Fetal Heart	heart
2	chr6:139829600-139835600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:139830600-139835600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:139831800-139836000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:139831800-139836000	Weak transcription	HepG2	liver
6	chr6:139832000-139836200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:139832000-139836400	Weak transcription	Adipose Nuclei	Adipose
8	chr6:139832000-139855200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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