Variant report

Variant	rs6916642
Chromosome Location	chr6:139844854-139844855
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694016..139698110-chr6:139843661..139847617,3	K562	blood:
2	chr6:139693301..139695661-chr6:139842764..139846349,4	K562	blood:
3	chr6:139843608..139846109-chr6:139850939..139853021,2	MCF-7	breast:
4	chr6:139839378..139842332-chr6:139842713..139845287,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11963759	1.00[CEU][hapmap]
rs11965564	1.00[CEU][hapmap]
rs11970753	1.00[CEU][hapmap]
rs17068794	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs17068816	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs590856	0.84[YRI][hapmap]
rs6907432	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139840800-139855200	Weak transcription	Pancreas	Pancrea
3	chr6:139841000-139854600	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:139841600-139849400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:139841600-139853000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:139842000-139846200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:139842600-139854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:139842600-139861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:139843800-139846400	Weak transcription	Placenta	Placenta
10	chr6:139844000-139845800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:139844200-139845200	Weak transcription	Hela-S3	cervix
12	chr6:139844200-139846600	Weak transcription	Fetal Heart	heart
13	chr6:139844400-139845800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:139844400-139846000	Weak transcription	NHDF-Ad	bronchial
15	chr6:139844400-139846200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:139844400-139846600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:139844400-139846600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:139844400-139847000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:139844400-139851800	Weak transcription	Fetal Lung	lung
20	chr6:139844800-139846000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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