Variant report

Variant	rs6907432
Chromosome Location	chr6:139840139-139840140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139694358..139697145-chr6:139839945..139841610,2	K562	blood:
2	chr6:139694852..139697145-chr6:139839945..139841957,2	K562	blood:
3	chr6:139840112..139841648-chr6:139848292..139851114,2	K562	blood:
4	chr6:139840112..139843143-chr6:139848292..139853200,4	K562	blood:
5	chr6:139839378..139842332-chr6:139842713..139845287,3	K562	blood:
6	chr6:139839895..139841964-chr6:139850103..139851737,2	MCF-7	breast:
7	chr6:139694119..139695948-chr6:139839491..139841581,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11963759	0.84[EUR][1000 genomes]
rs11970753	0.84[EUR][1000 genomes]
rs17068794	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17068816	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916642	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139837000-139840400	Weak transcription	HSMMtube	muscle
3	chr6:139837000-139840600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:139837000-139840600	Weak transcription	NHDF-Ad	bronchial
5	chr6:139837000-139840600	Weak transcription	Osteobl	bone
6	chr6:139837000-139843600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:139837000-139843600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:139837000-139843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:139837000-139843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:139837200-139840400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:139837200-139840600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:139837200-139840600	Weak transcription	Placenta	Placenta
13	chr6:139837200-139840800	Weak transcription	Adipose Nuclei	Adipose
14	chr6:139837800-139840400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:139837800-139840600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:139838000-139840600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:139838000-139841000	Weak transcription	HMEC	breast
18	chr6:139838000-139844000	Weak transcription	Hela-S3	cervix
19	chr6:139838200-139841200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:139838400-139840400	Weak transcription	NHEK	skin
21	chr6:139838400-139840800	Weak transcription	Stomach Mucosa	stomach
22	chr6:139838800-139841600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr6:139839000-139840400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:139839200-139840400	Enhancers	Fetal Heart	heart
25	chr6:139839600-139842000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:139839800-139840800	Enhancers	Pancreas	Pancrea
27	chr6:139839800-139841600	Flanking Active TSS	K562	blood
28	chr6:139839800-139842000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:139840000-139840800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:139840000-139841400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:139840000-139842600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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