Variant report

Variant	rs6537469
Chromosome Location	chr4:148219623-148219624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10018487	0.82[ASN][1000 genomes]
rs10028362	0.82[ASN][1000 genomes]
rs11100947	0.82[ASN][1000 genomes]
rs11100951	0.86[ASN][1000 genomes]
rs11100954	0.82[ASN][1000 genomes]
rs11100955	0.82[ASN][1000 genomes]
rs11100956	0.83[ASN][1000 genomes]
rs11100957	0.83[ASN][1000 genomes]
rs11736396	0.82[ASN][1000 genomes]
rs1346596	0.87[ASN][1000 genomes]
rs1346597	0.87[ASN][1000 genomes]
rs1346601	0.83[ASN][1000 genomes]
rs1366690	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1366693	0.83[ASN][1000 genomes]
rs1429131	0.86[ASN][1000 genomes]
rs1429132	0.85[ASN][1000 genomes]
rs1429135	0.83[ASN][1000 genomes]
rs1429136	0.82[ASN][1000 genomes]
rs1579453	0.83[ASN][1000 genomes]
rs1820830	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1820831	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2082028	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2357616	0.82[ASN][1000 genomes]
rs2357617	0.82[ASN][1000 genomes]
rs2562861	0.85[ASN][1000 genomes]
rs2562862	0.85[ASN][1000 genomes]
rs2562863	0.84[ASN][1000 genomes]
rs2714881	0.85[ASN][1000 genomes]
rs2714882	0.85[ASN][1000 genomes]
rs2714883	0.85[ASN][1000 genomes]
rs2714884	0.85[ASN][1000 genomes]
rs2714897	0.87[ASN][1000 genomes]
rs2953287	0.84[ASN][1000 genomes]
rs4835388	0.81[ASN][1000 genomes]
rs4835389	0.82[ASN][1000 genomes]
rs4835390	0.82[ASN][1000 genomes]
rs4835393	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6537460	0.82[ASN][1000 genomes]
rs6537461	0.82[ASN][1000 genomes]
rs6537464	0.82[ASN][1000 genomes]
rs6537465	0.82[ASN][1000 genomes]
rs6537466	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6537470	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6537471	0.87[ASN][1000 genomes]
rs6824518	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6829397	0.82[ASN][1000 genomes]
rs6831149	0.83[ASN][1000 genomes]
rs6835652	0.86[ASN][1000 genomes]
rs6835738	0.82[ASN][1000 genomes]
rs6841482	0.84[ASN][1000 genomes]
rs6842606	0.82[ASN][1000 genomes]
rs6844496	0.85[ASN][1000 genomes]
rs6853240	0.83[ASN][1000 genomes]
rs71640639	0.80[ASN][1000 genomes]
rs717618	0.82[ASN][1000 genomes]
rs717619	0.82[ASN][1000 genomes]
rs736551	0.86[ASN][1000 genomes]
rs7695811	0.80[ASN][1000 genomes]
rs7698103	0.83[ASN][1000 genomes]
rs9308216	0.85[ASN][1000 genomes]
rs934143	0.83[ASN][1000 genomes]
rs934144	0.83[ASN][1000 genomes]
rs934145	0.85[ASN][1000 genomes]
rs9991498	0.82[ASN][1000 genomes]
rs9995285	0.82[ASN][1000 genomes]
rs9995566	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148219200-148222600	Weak transcription	Ovary	ovary

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