Variant report

Variant	rs71640639
Chromosome Location	chr4:148169164-148169165
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148167022..148169732-chr4:149288503..149290776,2	K562	blood:

Variant related genes	Relation type
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10007070	0.85[ASN][1000 genomes]
rs10013682	0.85[ASN][1000 genomes]
rs10014341	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10017381	0.85[ASN][1000 genomes]
rs10018487	0.83[ASN][1000 genomes]
rs10019007	0.87[ASN][1000 genomes]
rs10021391	0.85[ASN][1000 genomes]
rs10022493	0.87[ASN][1000 genomes]
rs10027201	0.83[ASN][1000 genomes]
rs10028362	0.83[ASN][1000 genomes]
rs10519877	0.82[ASN][1000 genomes]
rs11100946	0.85[ASN][1000 genomes]
rs11100947	0.83[ASN][1000 genomes]
rs11100951	0.83[ASN][1000 genomes]
rs11100954	0.83[ASN][1000 genomes]
rs11100955	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11100956	0.82[ASN][1000 genomes]
rs11100957	0.82[ASN][1000 genomes]
rs11736396	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13104597	0.87[ASN][1000 genomes]
rs13115689	0.85[ASN][1000 genomes]
rs1346601	0.82[ASN][1000 genomes]
rs1354883	0.83[ASN][1000 genomes]
rs1354886	0.87[ASN][1000 genomes]
rs1366693	0.82[ASN][1000 genomes]
rs1395816	0.83[ASN][1000 genomes]
rs1395819	0.83[ASN][1000 genomes]
rs1429135	0.82[ASN][1000 genomes]
rs1429136	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1466985	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1472846	0.87[ASN][1000 genomes]
rs1507484	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1507488	0.82[ASN][1000 genomes]
rs1507489	0.82[ASN][1000 genomes]
rs1507490	0.83[ASN][1000 genomes]
rs1507491	0.83[ASN][1000 genomes]
rs1820829	0.87[ASN][1000 genomes]
rs1911587	0.80[ASN][1000 genomes]
rs1948969	0.87[ASN][1000 genomes]
rs2202701	0.87[ASN][1000 genomes]
rs2202702	0.87[ASN][1000 genomes]
rs2357598	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2357615	0.85[ASN][1000 genomes]
rs2357616	0.83[ASN][1000 genomes]
rs2357617	0.83[ASN][1000 genomes]
rs4835073	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4835380	0.83[ASN][1000 genomes]
rs4835381	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4835388	0.81[ASN][1000 genomes]
rs4835389	0.83[ASN][1000 genomes]
rs4835390	0.83[ASN][1000 genomes]
rs6537457	0.87[ASN][1000 genomes]
rs6537460	0.83[ASN][1000 genomes]
rs6537461	0.83[ASN][1000 genomes]
rs6537462	0.81[ASN][1000 genomes]
rs6537464	0.83[ASN][1000 genomes]
rs6537465	0.83[ASN][1000 genomes]
rs6537469	0.80[ASN][1000 genomes]
rs6829397	0.83[ASN][1000 genomes]
rs6831149	0.82[ASN][1000 genomes]
rs6832238	0.87[ASN][1000 genomes]
rs6835738	0.83[ASN][1000 genomes]
rs6842606	0.83[ASN][1000 genomes]
rs6853240	0.82[ASN][1000 genomes]
rs6857839	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs717618	0.83[ASN][1000 genomes]
rs717619	0.83[ASN][1000 genomes]
rs7673748	0.87[ASN][1000 genomes]
rs7695692	0.87[ASN][1000 genomes]
rs7695811	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698103	0.82[ASN][1000 genomes]
rs9308216	0.80[ASN][1000 genomes]
rs934143	0.82[ASN][1000 genomes]
rs934144	0.82[ASN][1000 genomes]
rs9991498	0.83[ASN][1000 genomes]
rs9995285	0.83[ASN][1000 genomes]
rs9995566	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148168200-148169600	Enhancers	A549	lung
2	chr4:148169000-148169200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:148169000-148169400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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