Variant report

Variant	rs6537579
Chromosome Location	chr10:50034833-50034834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50021104..50023943-chr10:50032685..50035174,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10857653	0.98[ASN][1000 genomes]
rs11101512	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11101515	0.92[ASN][1000 genomes]
rs11101516	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101518	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101520	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101521	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101522	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101524	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101525	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101527	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246033	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12247830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12248218	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12249974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12251517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12260555	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12261146	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs12264889	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12268007	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12268803	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17699445	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs17699451	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17836512	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs2377655	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2928402	0.84[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.94[TSI][hapmap];0.81[ASN][1000 genomes]
rs2928403	0.84[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs3750864	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs3789322	0.87[ASN][1000 genomes]
rs41283275	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45520233	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4596990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:50022600-50040400	Weak transcription	Lung	lung
8	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:50026000-50048200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:50028400-50042000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr10:50029000-50051400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:50029200-50036600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:50029200-50052000	Strong transcription	Primary hematopoietic stem cells	blood
15	chr10:50030000-50035400	Weak transcription	Primary T cells from cord blood	blood
16	chr10:50030200-50036800	Weak transcription	Fetal Thymus	thymus
17	chr10:50030800-50038200	Weak transcription	Spleen	Spleen
18	chr10:50032000-50035600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:50034400-50036800	Strong transcription	GM12878-XiMat	blood

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