Variant report

Variant	rs3750864
Chromosome Location	chr10:50105407-50105408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50100816..50103607-chr10:50104193..50105743,2	K562	blood:
2	chr10:50103563..50106374-chr10:50108506..50110662,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11101474	1.00[CEU][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap]
rs11101498	0.85[EUR][1000 genomes]
rs11101512	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs11101518	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs11101519	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11101520	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs11101521	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs11101528	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12247830	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12247839	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12248218	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs12249974	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12251517	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12260555	0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs12261146	0.88[JPT][hapmap]
rs12268007	1.00[JPT][hapmap]
rs12412647	1.00[CEU][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap]
rs17699445	0.88[JPT][hapmap]
rs17699451	0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs17836435	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs17836512	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127589	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs2928402	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs2928403	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs6537578	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6537579	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs7918931	0.92[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv975799	chr10:50102058-50106456	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
4	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:50088000-50109400	Weak transcription	Right Atrium	heart
6	chr10:50092600-50106800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:50096600-50106200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:50096600-50107800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:50098000-50110000	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:50098200-50110200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:50099600-50108400	Weak transcription	Adipose Nuclei	Adipose
12	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:50102000-50107000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:50102600-50106000	Strong transcription	Spleen	Spleen
15	chr10:50103400-50108400	Weak transcription	Left Ventricle	heart
16	chr10:50103600-50105800	Weak transcription	GM12878-XiMat	blood
17	chr10:50104000-50115800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:50104800-50119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:50105000-50105600	Bivalent Enhancer	Fetal Stomach	stomach
20	chr10:50105000-50109000	Weak transcription	Colonic Mucosa	Colon
21	chr10:50105200-50105600	Enhancers	NHDF-Ad	bronchial
22	chr10:50105200-50107800	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:50105400-50106200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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