Variant report

Variant	rs17836435
Chromosome Location	chr10:49974920-49974921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11101474	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11101496	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11101498	0.89[EUR][1000 genomes]
rs11101507	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12217489	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12219280	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12220783	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12411976	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12412588	0.89[AFR][1000 genomes]
rs12412647	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12572455	1.00[ASW][hapmap]
rs17836512	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs2127589	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3750864	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs41282009	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs41282011	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57839743	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs60048486	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895374	chr10:49969556-49990081	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49962400-49980600	Strong transcription	Primary B cells from cord blood	blood
2	chr10:49967600-49977800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:49967800-49978200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:49967800-49979000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:49968000-49977200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:49968600-49978600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:49969400-49989800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:49971200-49977200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:49971400-49976800	Weak transcription	Fetal Stomach	stomach
12	chr10:49971400-49982600	Weak transcription	Spleen	Spleen
13	chr10:49971800-49975600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:49974000-49975200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:49974400-49976400	Strong transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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