Variant report

Variant	rs11101507
Chromosome Location	chr10:50012900-50012901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:50007868..50011089-chr10:50011494..50014036,4	MCF-7	breast:
2	chr10:50011301..50013130-chr10:50016318..50018256,2	MCF-7	breast:
3	chr10:50011536..50013499-chr10:50028535..50030242,2	MCF-7	breast:
4	chr10:50012510..50015290-chr10:50020965..50023375,3	MCF-7	breast:
5	chr10:50012639..50013621-chr10:50022857..50023759,3	MCF-7	breast:
6	chr10:50011032..50014812-chr10:50025927..50027937,3	K562	blood:
7	chr10:50011096..50015039-chr10:50015649..50020097,7	MCF-7	breast:
8	chr10:50012503..50014685-chr10:50027009..50029930,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11101474	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11101496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101498	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12217489	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220783	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411976	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412647	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17836435	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2127589	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs41282009	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41282011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57839743	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58293991	0.85[ASN][1000 genomes]
rs60048486	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50005200-50026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:50007200-50014600	Weak transcription	NHLF	lung
3	chr10:50007200-50017200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:50007600-50013000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr10:50008200-50013600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:50008200-50015000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:50008400-50013600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:50008600-50013000	Weak transcription	Right Atrium	heart
9	chr10:50008600-50013200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:50009000-50013600	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr10:50009200-50015200	Genic enhancers	Primary B cells from cord blood	blood
12	chr10:50009400-50013200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:50009600-50013200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:50009600-50014800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:50009600-50028000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:50009800-50013000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:50010800-50014800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr10:50010800-50016000	Enhancers	Fetal Thymus	thymus
19	chr10:50011000-50014000	Enhancers	Fetal Brain Male	brain
20	chr10:50011000-50014600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:50011200-50013200	Genic enhancers	GM12878-XiMat	blood
22	chr10:50011200-50014800	Enhancers	Brain Germinal Matrix	brain
23	chr10:50011200-50015400	Enhancers	Fetal Muscle Leg	muscle
24	chr10:50011200-50016600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
25	chr10:50011400-50016200	Genic enhancers	Primary monocytes fromperipheralblood	blood
26	chr10:50011600-50013000	Weak transcription	Lung	lung
27	chr10:50011600-50013800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:50011600-50016200	Genic enhancers	Monocytes-CD14+_RO01746	blood
29	chr10:50011600-50017000	Enhancers	Fetal Stomach	stomach
30	chr10:50011800-50014600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr10:50012000-50013200	Enhancers	Brain Hippocampus Middle	brain
32	chr10:50012000-50013200	Enhancers	Thymus	Thymus
33	chr10:50012000-50013600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:50012000-50014800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:50012000-50014800	Enhancers	Fetal Lung	lung
36	chr10:50012200-50013600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:50012200-50014200	Enhancers	Brain Cingulate Gyrus	brain
38	chr10:50012200-50014600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:50012400-50013200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr10:50012400-50014600	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr10:50012400-50014600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr10:50012600-50013000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:50012600-50013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:50012600-50013200	Enhancers	HepG2	liver
45	chr10:50012600-50013800	Enhancers	Primary hematopoietic stem cells	blood
46	chr10:50012600-50014600	Enhancers	Fetal Intestine Large	intestine
47	chr10:50012600-50014600	Enhancers	Left Ventricle	heart
48	chr10:50012600-50015000	Enhancers	Fetal Muscle Trunk	muscle
49	chr10:50012800-50013000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr10:50012800-50013000	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links