Variant report

Variant	rs58293991
Chromosome Location	chr10:49980509-49980510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11101474	0.99[ASN][1000 genomes]
rs11101496	0.85[ASN][1000 genomes]
rs11101498	0.85[ASN][1000 genomes]
rs11101507	0.85[ASN][1000 genomes]
rs12217489	0.85[ASN][1000 genomes]
rs12219280	0.85[ASN][1000 genomes]
rs12220783	0.85[ASN][1000 genomes]
rs12411976	0.85[ASN][1000 genomes]
rs12412647	0.97[ASN][1000 genomes]
rs41282009	0.85[ASN][1000 genomes]
rs41282011	0.85[ASN][1000 genomes]
rs57839743	0.91[ASN][1000 genomes]
rs60048486	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895374	chr10:49969556-49990081	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49962400-49980600	Strong transcription	Primary B cells from cord blood	blood
2	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:49969400-49989800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:49971400-49982600	Weak transcription	Spleen	Spleen
6	chr10:49975200-49982400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:49976400-49981200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:49977000-49990400	Weak transcription	Fetal Brain Male	brain
9	chr10:49977400-49981200	Weak transcription	Fetal Thymus	thymus
10	chr10:49979200-49984600	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:49979400-49989200	Strong transcription	Primary hematopoietic stem cells	blood
12	chr10:49979600-49990600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:49979800-49991000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:49979800-49992400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:49980000-49981800	Weak transcription	GM12878-XiMat	blood
16	chr10:49980000-49990400	Weak transcription	Right Atrium	heart
17	chr10:49980200-49980600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:49980400-49982000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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