Variant report

Variant	rs57839743
Chromosome Location	chr10:49993584-49993585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11101474	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11101496	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11101498	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11101507	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12217489	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12219280	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12220783	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12411976	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12412647	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17836435	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2127589	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs41282009	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41282011	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58293991	0.91[ASN][1000 genomes]
rs60048486	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
4	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
5	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:49985600-49999800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:49988800-49997600	Weak transcription	Spleen	Spleen
8	chr10:49990600-49993600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:49990600-49999000	Weak transcription	Lung	lung
10	chr10:49991000-49994600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:49991000-49996600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:49991400-49993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49992000-49995200	Weak transcription	Fetal Lung	lung
14	chr10:49992200-49994600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:49992400-49994600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:49992600-49999800	Weak transcription	Small Intestine	intestine
17	chr10:49992800-50005200	Strong transcription	Primary hematopoietic stem cells	blood
18	chr10:49993400-50002200	Strong transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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