The 2.0 version of rSNPBase

Variant report

Variant rs6541341
Chromosome Location chr1:94688405-94688406
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94668800-94699000 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr1:94673800-94698600 Weak transcription Fetal Muscle Trunk muscle
3 chr1:94673800-94701000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:94674000-94697000 Weak transcription HSMMtube muscle
5 chr1:94676400-94691600 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr1:94681200-94689000 Genic enhancers HUVEC blood vessel
7 chr1:94683000-94690000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:94684200-94690000 Strong transcription NHEK skin
9 chr1:94684800-94692800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:94684800-94698600 Weak transcription Left Ventricle heart
11 chr1:94685000-94691400 Weak transcription Fetal Heart heart
12 chr1:94685000-94691800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr1:94685000-94692000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr1:94685000-94701000 Weak transcription Right Ventricle heart
15 chr1:94685200-94690400 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:94685200-94691800 Weak transcription Adipose Nuclei Adipose
17 chr1:94685200-94696800 Weak transcription HepG2 liver
18 chr1:94685200-94700600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:94685200-94700800 Weak transcription NHLF lung
20 chr1:94685200-94701000 Weak transcription Psoas Muscle Psoas
21 chr1:94685400-94689200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:94685400-94690800 Weak transcription HSMM muscle
23 chr1:94685400-94697400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:94685600-94696000 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:94685800-94693800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr1:94685800-94699400 Weak transcription Fetal Muscle Leg muscle
27 chr1:94686000-94691600 Weak transcription NH-A brain
28 chr1:94686600-94688800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:94687000-94690400 Weak transcription Muscle Satellite Cultured Cells --
30 chr1:94687800-94689800 Strong transcription Osteobl bone
31 chr1:94688000-94690200 Weak transcription NHDF-Ad bronchial
32 chr1:94688000-94691600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:94688000-94693200 Weak transcription A549 lung
34 chr1:94688000-94694600 Weak transcription HMEC breast
35 chr1:94688200-94688600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:94688200-94691400 Weak transcription Liver Liver
37 chr1:94688200-94694200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:94688400-94694400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015