Variant report
Variant | rs6543732 |
---|---|
Chromosome Location | chr2:33879316-33879317 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10166261 | 0.85[AMR][1000 genomes] |
rs10206913 | 0.85[AMR][1000 genomes] |
rs10209549 | 0.85[AMR][1000 genomes] |
rs11893685 | 0.85[AMR][1000 genomes] |
rs11893956 | 1.00[AMR][1000 genomes] |
rs11904517 | 1.00[AMR][1000 genomes] |
rs13382801 | 0.80[AFR][1000 genomes] |
rs13386750 | 0.85[AMR][1000 genomes] |
rs13386888 | 0.93[AMR][1000 genomes] |
rs13387013 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs13394725 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs13394729 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs13394903 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs13420195 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs13422585 | 1.00[AMR][1000 genomes] |
rs28710791 | 0.85[AMR][1000 genomes] |
rs57815046 | 0.85[AMR][1000 genomes] |
rs58024266 | 0.85[AMR][1000 genomes] |
rs61266239 | 0.85[AMR][1000 genomes] |
rs6543730 | 0.85[AMR][1000 genomes] |
rs6543731 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6712560 | 1.00[AMR][1000 genomes] |
rs6714152 | 1.00[AMR][1000 genomes] |
rs6725745 | 1.00[AMR][1000 genomes] |
rs6725864 | 1.00[AMR][1000 genomes] |
rs6729557 | 1.00[AMR][1000 genomes] |
rs7577994 | 0.85[AMR][1000 genomes] |
rs7601673 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3350238 | chr2:33849408-33979026 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv963221 | chr2:33877828-33892244 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:33879000-33880800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |