Variant report

Variant	rs6543730
Chromosome Location	chr2:33872287-33872288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10166261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10168835	1.00[YRI][hapmap]
rs10189754	0.84[AFR][1000 genomes]
rs10193965	0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10206913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10209549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10210466	1.00[EUR][1000 genomes]
rs11893685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11893956	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11901345	1.00[EUR][1000 genomes]
rs11904517	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13382801	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13386750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13386888	1.00[EUR][1000 genomes]
rs13387013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13387494	1.00[EUR][1000 genomes]
rs13394725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13418425	1.00[EUR][1000 genomes]
rs13420195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13421445	0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13422585	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013668	1.00[EUR][1000 genomes]
rs1900779	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2029043	1.00[EUR][1000 genomes]
rs2029044	1.00[EUR][1000 genomes]
rs2029045	1.00[EUR][1000 genomes]
rs28710791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57815046	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58024266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58859108	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59908005	0.98[AFR][1000 genomes]
rs61266239	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6543731	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6543732	0.85[AMR][1000 genomes]
rs6709613	0.84[YRI][hapmap]
rs6712560	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6714152	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6725745	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6725864	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6726438	1.00[EUR][1000 genomes]
rs6729557	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756873	0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6757106	0.95[YRI][hapmap]
rs6760064	0.84[AFR][1000 genomes]
rs72867445	1.00[EUR][1000 genomes]
rs72867461	1.00[EUR][1000 genomes]
rs72867501	1.00[EUR][1000 genomes]
rs72869103	1.00[EUR][1000 genomes]
rs72869105	1.00[EUR][1000 genomes]
rs7565606	0.84[AFR][1000 genomes]
rs7577994	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7596614	0.83[YRI][hapmap]
rs7601673	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917372	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33869800-33878000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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