Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10166261	0.86[AFR][1000 genomes]
rs10168835	0.95[YRI][hapmap]
rs10189754	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193965	0.84[YRI][hapmap]
rs10200581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10206913	0.86[AFR][1000 genomes]
rs10209549	0.84[AFR][1000 genomes]
rs13421445	0.86[YRI][hapmap]
rs17013659	1.00[ASN][1000 genomes]
rs57815046	0.86[AFR][1000 genomes]
rs58024266	0.86[AFR][1000 genomes]
rs59908005	0.86[AFR][1000 genomes]
rs61266239	0.86[AFR][1000 genomes]
rs6543730	0.84[AFR][1000 genomes]
rs6718017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731410	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756873	0.86[YRI][hapmap]
rs6757106	0.84[YRI][hapmap]
rs73928936	0.90[ASN][1000 genomes]
rs73928954	1.00[ASN][1000 genomes]
rs7565606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577994	0.81[AFR][1000 genomes]
rs7580073	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33869800-33878000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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