Variant report

Variant	rs10200581
Chromosome Location	chr2:33861293-33861294
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10189754	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10193965	0.83[ASW][hapmap]
rs17013659	0.90[ASN][1000 genomes]
rs6718017	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6725572	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6731410	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6760064	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73928936	0.80[ASN][1000 genomes]
rs73928954	0.90[ASN][1000 genomes]
rs7565606	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7580073	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv963220	chr2:33860909-33862757	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33859800-33862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:33860000-33862200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:33860400-33862800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:33860400-33862800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:33860600-33861600	Enhancers	Fetal Heart	heart
6	chr2:33860600-33862200	Enhancers	Primary hematopoietic stem cells	blood
7	chr2:33860600-33863200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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