Variant report

Variant	rs10189754
Chromosome Location	chr2:33870666-33870667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10166261	0.86[AFR][1000 genomes]
rs10200581	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10206913	0.86[AFR][1000 genomes]
rs10209549	0.84[AFR][1000 genomes]
rs17013659	1.00[ASN][1000 genomes]
rs57815046	0.86[AFR][1000 genomes]
rs58024266	0.86[AFR][1000 genomes]
rs59908005	0.86[AFR][1000 genomes]
rs61266239	0.86[AFR][1000 genomes]
rs6543730	0.84[AFR][1000 genomes]
rs6718017	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725572	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731410	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760064	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73928936	0.90[ASN][1000 genomes]
rs73928954	1.00[ASN][1000 genomes]
rs7565606	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577994	0.81[AFR][1000 genomes]
rs7580073	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33868600-33870800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:33869800-33871000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:33869800-33878000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:33870600-33871200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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