Variant report

Variant	rs59908005
Chromosome Location	chr2:33871170-33871171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10166261	1.00[AFR][1000 genomes]
rs10189754	0.86[AFR][1000 genomes]
rs10193965	0.82[AFR][1000 genomes]
rs10206913	1.00[AFR][1000 genomes]
rs10209549	0.98[AFR][1000 genomes]
rs13421445	0.85[AFR][1000 genomes]
rs28710791	0.84[AFR][1000 genomes]
rs57815046	1.00[AFR][1000 genomes]
rs58024266	1.00[AFR][1000 genomes]
rs61266239	1.00[AFR][1000 genomes]
rs6543730	0.98[AFR][1000 genomes]
rs6718017	0.81[AFR][1000 genomes]
rs6731410	0.81[AFR][1000 genomes]
rs6756873	0.82[AFR][1000 genomes]
rs6760064	0.86[AFR][1000 genomes]
rs7565606	0.86[AFR][1000 genomes]
rs7577994	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33869800-33878000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:33870600-33871200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:33870800-33871200	Enhancers	Psoas Muscle	Psoas
4	chr2:33870800-33871400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:33870800-33871600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:33870800-33871600	Enhancers	Adipose Nuclei	Adipose
7	chr2:33871000-33871200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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