Variant report

Variant	rs6756873
Chromosome Location	chr2:33859135-33859136
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10166261	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10168835	1.00[YRI][hapmap]
rs10182073	0.84[AFR][1000 genomes]
rs10193965	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10206913	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10209104	0.87[AFR][1000 genomes]
rs10209549	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10210466	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11893685	1.00[EUR][1000 genomes]
rs11893956	1.00[EUR][1000 genomes]
rs11901345	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11904517	1.00[EUR][1000 genomes]
rs13382801	1.00[EUR][1000 genomes]
rs13386750	1.00[EUR][1000 genomes]
rs13386888	1.00[EUR][1000 genomes]
rs13387013	1.00[EUR][1000 genomes]
rs13387494	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394725	1.00[EUR][1000 genomes]
rs13394729	1.00[EUR][1000 genomes]
rs13394903	1.00[EUR][1000 genomes]
rs13418425	1.00[EUR][1000 genomes]
rs13420195	1.00[EUR][1000 genomes]
rs13421445	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13422585	1.00[EUR][1000 genomes]
rs13428393	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17013668	1.00[EUR][1000 genomes]
rs1900779	1.00[EUR][1000 genomes]
rs2029043	1.00[EUR][1000 genomes]
rs2029044	1.00[EUR][1000 genomes]
rs2029045	1.00[EUR][1000 genomes]
rs28549308	0.87[AFR][1000 genomes]
rs28710791	1.00[EUR][1000 genomes]
rs57815046	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58024266	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58859108	1.00[EUR][1000 genomes]
rs59908005	0.82[AFR][1000 genomes]
rs61266239	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6543730	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6543731	1.00[EUR][1000 genomes]
rs6709613	0.89[YRI][hapmap]
rs6712560	1.00[EUR][1000 genomes]
rs6714152	1.00[EUR][1000 genomes]
rs6725745	1.00[EUR][1000 genomes]
rs6725864	1.00[EUR][1000 genomes]
rs6726438	1.00[EUR][1000 genomes]
rs6729557	1.00[EUR][1000 genomes]
rs6757106	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs72867445	1.00[EUR][1000 genomes]
rs72867461	1.00[EUR][1000 genomes]
rs72867462	0.86[AFR][1000 genomes]
rs72867501	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869103	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869105	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577994	1.00[EUR][1000 genomes]
rs7596614	0.89[YRI][hapmap]
rs7601673	1.00[EUR][1000 genomes]
rs9917372	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33845200-33859400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:33845200-33859600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:33855200-33859600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:33858200-33859600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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