Variant report

Variant	rs9917372
Chromosome Location	chr2:33933903-33933904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10166261	0.87[EUR][1000 genomes]
rs10193965	0.87[EUR][1000 genomes]
rs10206913	0.87[EUR][1000 genomes]
rs10209549	0.87[EUR][1000 genomes]
rs10210466	0.87[EUR][1000 genomes]
rs11893685	0.87[EUR][1000 genomes]
rs11893956	0.87[EUR][1000 genomes]
rs11901345	0.87[EUR][1000 genomes]
rs11904517	0.87[EUR][1000 genomes]
rs13382801	0.87[EUR][1000 genomes]
rs13386750	0.87[EUR][1000 genomes]
rs13386888	0.87[EUR][1000 genomes]
rs13387013	0.87[EUR][1000 genomes]
rs13387494	0.87[EUR][1000 genomes]
rs13394725	0.87[EUR][1000 genomes]
rs13394729	0.87[EUR][1000 genomes]
rs13394903	0.87[EUR][1000 genomes]
rs13418425	0.87[EUR][1000 genomes]
rs13420195	0.87[EUR][1000 genomes]
rs13421445	0.87[EUR][1000 genomes]
rs13422585	0.87[EUR][1000 genomes]
rs17013668	0.87[EUR][1000 genomes]
rs1900779	0.87[EUR][1000 genomes]
rs2029043	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2029044	0.87[EUR][1000 genomes]
rs2029045	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28710791	0.87[EUR][1000 genomes]
rs57815046	0.87[EUR][1000 genomes]
rs58024266	0.87[EUR][1000 genomes]
rs58859108	0.87[EUR][1000 genomes]
rs61266239	0.87[EUR][1000 genomes]
rs6543730	0.87[EUR][1000 genomes]
rs6543731	0.87[EUR][1000 genomes]
rs6712560	0.87[EUR][1000 genomes]
rs6714152	0.87[EUR][1000 genomes]
rs6725745	0.87[EUR][1000 genomes]
rs6725864	0.87[EUR][1000 genomes]
rs6726438	0.87[EUR][1000 genomes]
rs6729557	0.87[EUR][1000 genomes]
rs6756873	0.87[EUR][1000 genomes]
rs72867445	0.87[EUR][1000 genomes]
rs72867461	0.87[EUR][1000 genomes]
rs72867501	0.87[EUR][1000 genomes]
rs72869103	0.87[EUR][1000 genomes]
rs72869105	0.87[EUR][1000 genomes]
rs7577994	0.87[EUR][1000 genomes]
rs7601673	0.87[EUR][1000 genomes]
rs9917307	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33930000-33937400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:33930200-33937000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:33930200-33937000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:33930400-33937000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:33930600-33935000	Weak transcription	HUVEC	blood vessel
6	chr2:33932000-33934200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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