Variant report

Variant	rs11901345
Chromosome Location	chr2:33853146-33853147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33848285..33850159-chr2:33851964..33854579,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10166261	1.00[EUR][1000 genomes]
rs10182073	0.83[AFR][1000 genomes]
rs10193965	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10206913	1.00[EUR][1000 genomes]
rs10209549	1.00[EUR][1000 genomes]
rs10210466	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11893685	1.00[EUR][1000 genomes]
rs11893956	1.00[EUR][1000 genomes]
rs11904517	1.00[EUR][1000 genomes]
rs13382801	1.00[EUR][1000 genomes]
rs13386750	1.00[EUR][1000 genomes]
rs13386888	1.00[EUR][1000 genomes]
rs13387013	1.00[EUR][1000 genomes]
rs13387494	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394725	1.00[EUR][1000 genomes]
rs13394729	1.00[EUR][1000 genomes]
rs13394903	1.00[EUR][1000 genomes]
rs13418425	1.00[EUR][1000 genomes]
rs13420195	1.00[EUR][1000 genomes]
rs13421445	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13422585	1.00[EUR][1000 genomes]
rs13428393	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17013668	1.00[EUR][1000 genomes]
rs1900779	1.00[EUR][1000 genomes]
rs2029043	1.00[EUR][1000 genomes]
rs2029044	1.00[EUR][1000 genomes]
rs2029045	1.00[EUR][1000 genomes]
rs28710791	1.00[EUR][1000 genomes]
rs57815046	1.00[EUR][1000 genomes]
rs58024266	1.00[EUR][1000 genomes]
rs58859108	1.00[EUR][1000 genomes]
rs61266239	1.00[EUR][1000 genomes]
rs6543730	1.00[EUR][1000 genomes]
rs6543731	1.00[EUR][1000 genomes]
rs6712560	1.00[EUR][1000 genomes]
rs6714152	1.00[EUR][1000 genomes]
rs6725745	1.00[EUR][1000 genomes]
rs6725864	1.00[EUR][1000 genomes]
rs6726438	1.00[EUR][1000 genomes]
rs6729557	1.00[EUR][1000 genomes]
rs6756873	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867445	1.00[EUR][1000 genomes]
rs72867461	1.00[EUR][1000 genomes]
rs72867501	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869103	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869105	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577994	1.00[EUR][1000 genomes]
rs7601673	1.00[EUR][1000 genomes]
rs9917372	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33845200-33859400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:33845200-33859600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:33851400-33853400	Weak transcription	Ovary	ovary

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