Variant report

Variant	rs13428393
Chromosome Location	chr2:33833262-33833263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33830666..33833557-chr2:33837571..33839781,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10168835	0.95[YRI][hapmap]
rs10182073	0.88[AFR][1000 genomes]
rs10193965	0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10209104	0.83[AFR][1000 genomes]
rs11901345	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs13387494	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13418425	0.81[AFR][1000 genomes]
rs13421445	0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28549308	0.89[AFR][1000 genomes]
rs6709613	0.94[YRI][hapmap]
rs6756873	0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6757106	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs72867462	0.82[AFR][1000 genomes]
rs7596614	0.94[YRI][hapmap]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:33830400-33834800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:33831600-33834600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:33832000-33833800	Enhancers	Ovary	ovary
6	chr2:33832200-33833400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:33832200-33833600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr2:33832200-33834200	Enhancers	Psoas Muscle	Psoas
9	chr2:33832400-33833400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr2:33832400-33833800	Enhancers	Brain Angular Gyrus	brain
11	chr2:33832600-33833400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:33832600-33833400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr2:33832600-33833400	Enhancers	Colon Smooth Muscle	Colon
14	chr2:33832600-33833400	Enhancers	Fetal Muscle Leg	muscle
15	chr2:33832600-33833600	Enhancers	Brain Cingulate Gyrus	brain
16	chr2:33832600-33833800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:33832800-33833400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:33832800-33833400	Enhancers	Fetal Stomach	stomach
19	chr2:33832800-33833800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr2:33832800-33833800	Enhancers	Brain Substantia Nigra	brain
21	chr2:33832800-33835000	Weak transcription	Placenta	Placenta
22	chr2:33833000-33833400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr2:33833000-33833400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:33833000-33833400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:33833000-33833400	Active TSS	Brain Anterior Caudate	brain
26	chr2:33833000-33833400	Flanking Active TSS	Brain Hippocampus Middle	brain
27	chr2:33833000-33833400	Flanking Active TSS	Fetal Heart	heart
28	chr2:33833000-33833400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr2:33833000-33833400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr2:33833200-33833400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr2:33833200-33833400	Enhancers	Stomach Smooth Muscle	stomach
32	chr2:33833200-33833600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr2:33833200-33833800	Enhancers	Left Ventricle	heart
34	chr2:33833200-33834000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr2:33833200-33834200	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr2:33833200-33834400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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