Variant report

Variant	rs7596614
Chromosome Location	chr2:33809471-33809472
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33808062..33809636-chr2:33842374..33844357,2	K562	blood:
2	chr2:33808414..33811833-chr2:33812334..33814725,3	K562	blood:
3	chr2:33259670..33261412-chr2:33809154..33810686,2	MCF-7	breast:
4	chr2:33808678..33811896-chr2:33820806..33824783,4	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10168835	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10182073	0.98[EUR][1000 genomes]
rs10193965	0.83[ASW][hapmap];0.89[YRI][hapmap]
rs13421445	0.89[YRI][hapmap]
rs28549308	0.98[EUR][1000 genomes]
rs6709613	0.81[LWK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs6726438	0.85[AFR][1000 genomes]
rs6756873	0.89[YRI][hapmap]
rs6757106	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.95[EUR][1000 genomes]
rs72867445	0.88[AFR][1000 genomes]
rs72867461	0.87[AFR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
3	chr2:33766800-33809800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:33776000-33809800	Weak transcription	Pancreas	Pancrea
5	chr2:33781200-33809800	Weak transcription	Gastric	stomach
6	chr2:33784000-33809800	Weak transcription	Right Ventricle	heart
7	chr2:33784000-33810000	Weak transcription	Fetal Intestine Small	intestine
8	chr2:33784200-33809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:33797600-33810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:33800800-33809800	Weak transcription	NHEK	skin
11	chr2:33802200-33809800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:33802800-33809600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:33802800-33809800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:33802800-33809800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:33803000-33809600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr2:33803000-33809800	Weak transcription	Ovary	ovary
18	chr2:33803000-33810000	Weak transcription	Brain Angular Gyrus	brain
19	chr2:33803400-33809800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:33803600-33809800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:33803800-33809800	Weak transcription	Esophagus	oesophagus
22	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
23	chr2:33805000-33809800	Weak transcription	Small Intestine	intestine
24	chr2:33805200-33810000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:33805600-33809800	Weak transcription	Lung	lung
26	chr2:33806400-33809800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:33806600-33809800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr2:33806600-33810000	Weak transcription	Fetal Kidney	kidney
29	chr2:33807000-33809800	Weak transcription	Spleen	Spleen
30	chr2:33807000-33811600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:33807000-33818200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr2:33807000-33820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:33807400-33810000	Weak transcription	HMEC	breast
34	chr2:33807400-33810600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr2:33807400-33814000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:33807400-33817600	Weak transcription	Fetal Brain Male	brain
37	chr2:33807600-33809800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:33807600-33812800	Strong transcription	NHLF	lung
39	chr2:33807600-33813800	Strong transcription	HSMM	muscle
40	chr2:33807600-33821000	Strong transcription	NH-A	brain
41	chr2:33807800-33812400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
43	chr2:33808000-33809800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr2:33808000-33809800	Weak transcription	Colonic Mucosa	Colon
45	chr2:33808200-33809600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
46	chr2:33808200-33809800	Weak transcription	Fetal Stomach	stomach
47	chr2:33808200-33809800	Weak transcription	Thymus	Thymus
48	chr2:33808200-33809800	Weak transcription	Hela-S3	cervix
49	chr2:33808200-33813800	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr2:33808200-33814600	Strong transcription	NHDF-Ad	bronchial

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