Variant report

Variant	rs6546318
Chromosome Location	chr2:67833596-67833597
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10207998	1.00[ASN][1000 genomes]
rs1023691	1.00[ASN][1000 genomes]
rs1023693	1.00[ASN][1000 genomes]
rs11126134	1.00[ASN][1000 genomes]
rs11126138	1.00[ASN][1000 genomes]
rs11900280	1.00[ASN][1000 genomes]
rs12620828	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12998432	1.00[ASN][1000 genomes]
rs12998660	1.00[ASN][1000 genomes]
rs13016594	1.00[ASN][1000 genomes]
rs13022809	1.00[ASN][1000 genomes]
rs13398669	0.91[AFR][1000 genomes]
rs1430789	1.00[ASN][1000 genomes]
rs1430790	1.00[ASN][1000 genomes]
rs1430791	1.00[ASN][1000 genomes]
rs1430792	1.00[ASN][1000 genomes]
rs1521050	1.00[ASN][1000 genomes]
rs17033691	1.00[ASN][1000 genomes]
rs2541015	1.00[ASN][1000 genomes]
rs2541028	1.00[ASN][1000 genomes]
rs2541030	1.00[ASN][1000 genomes]
rs2541034	1.00[ASN][1000 genomes]
rs2683676	1.00[ASN][1000 genomes]
rs2683682	1.00[ASN][1000 genomes]
rs2861640	1.00[ASN][1000 genomes]
rs2861644	1.00[ASN][1000 genomes]
rs2861645	1.00[ASN][1000 genomes]
rs2861648	1.00[ASN][1000 genomes]
rs2861681	1.00[ASN][1000 genomes]
rs2861686	1.00[ASN][1000 genomes]
rs2861687	1.00[ASN][1000 genomes]
rs2861689	1.00[ASN][1000 genomes]
rs2861698	1.00[ASN][1000 genomes]
rs2861700	1.00[ASN][1000 genomes]
rs2861701	1.00[ASN][1000 genomes]
rs2861703	1.00[ASN][1000 genomes]
rs2902007	1.00[ASN][1000 genomes]
rs2902008	1.00[ASN][1000 genomes]
rs2902023	1.00[ASN][1000 genomes]
rs2902025	1.00[ASN][1000 genomes]
rs35250398	1.00[ASN][1000 genomes]
rs4260227	1.00[ASN][1000 genomes]
rs4362541	1.00[ASN][1000 genomes]
rs4381768	1.00[ASN][1000 genomes]
rs4533457	1.00[ASN][1000 genomes]
rs4671806	1.00[ASN][1000 genomes]
rs4671811	1.00[ASN][1000 genomes]
rs4671812	1.00[ASN][1000 genomes]
rs4671813	1.00[ASN][1000 genomes]
rs4671817	1.00[ASN][1000 genomes]
rs6546317	1.00[ASN][1000 genomes]
rs6546320	1.00[ASN][1000 genomes]
rs6546322	1.00[ASN][1000 genomes]
rs6717863	1.00[ASN][1000 genomes]
rs6724133	1.00[ASN][1000 genomes]
rs6730286	1.00[ASN][1000 genomes]
rs6746394	1.00[ASN][1000 genomes]
rs6752799	1.00[ASN][1000 genomes]
rs72901866	0.89[AFR][1000 genomes]
rs7425711	1.00[ASN][1000 genomes]
rs7559840	0.82[YRI][hapmap]
rs7569221	0.88[AFR][1000 genomes]
rs7569813	1.00[ASN][1000 genomes]
rs7595894	1.00[ASN][1000 genomes]
rs7598280	1.00[ASN][1000 genomes]
rs9309402	1.00[ASN][1000 genomes]
rs980227	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67828000-67839400	Weak transcription	Placenta	Placenta

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