Variant report

Variant	rs7569221
Chromosome Location	chr2:67839248-67839249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10182267	0.83[AMR][1000 genomes]
rs10184721	0.85[AMR][1000 genomes]
rs10187948	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10189868	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10189870	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10190391	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10197903	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10207162	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11883783	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11898758	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11904407	0.85[AMR][1000 genomes]
rs11904581	0.85[AMR][1000 genomes]
rs13387868	0.86[EUR][1000 genomes]
rs13398669	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13422158	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58277478	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60347662	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6546318	0.88[AFR][1000 genomes]
rs6706989	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6749548	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6761524	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901828	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72901866	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7559840	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7567910	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7568300	0.85[AMR][1000 genomes]
rs7569836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7570412	0.85[AMR][1000 genomes]
rs7579880	0.83[AMR][1000 genomes]
rs7582772	0.85[AMR][1000 genomes]
rs7583557	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7594754	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7603152	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7604451	0.83[AMR][1000 genomes]
rs7607277	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67828000-67839400	Weak transcription	Placenta	Placenta
2	chr2:67839200-67839400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:67839200-67840200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:67839200-67840800	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links