Variant report

Variant	rs10187948
Chromosome Location	chr2:67845122-67845123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10182267	0.83[AMR][1000 genomes]
rs10184721	0.85[AMR][1000 genomes]
rs10189868	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10189870	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10190391	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10197903	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10207162	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11883783	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11898758	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11904407	0.85[AMR][1000 genomes]
rs11904581	0.85[AMR][1000 genomes]
rs13387868	0.86[EUR][1000 genomes]
rs13398669	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13398896	0.82[CEU][hapmap]
rs13422158	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58277478	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60347662	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6706989	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6749548	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6761524	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72901828	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72901866	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7559840	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7567910	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7568300	0.85[AMR][1000 genomes]
rs7569221	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7569836	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7570412	0.85[AMR][1000 genomes]
rs7579880	0.83[AMR][1000 genomes]
rs7582772	0.85[AMR][1000 genomes]
rs7583557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7594754	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7603152	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7604451	0.83[AMR][1000 genomes]
rs7607277	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67840200-67847800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:67843200-67845400	Enhancers	Rectal Smooth Muscle	rectum
3	chr2:67843400-67845200	Enhancers	Colon Smooth Muscle	Colon
4	chr2:67844200-67845400	Enhancers	Fetal Lung	lung
5	chr2:67844600-67846600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:67844600-67849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:67845000-67845400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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