Variant report

Variant	rs10190391
Chromosome Location	chr2:67798503-67798504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10182267	0.90[AMR][1000 genomes]
rs10187948	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10189868	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10189870	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10197903	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10201993	0.83[AMR][1000 genomes]
rs10204519	0.85[AMR][1000 genomes]
rs10207162	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11883783	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11898758	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11900117	0.85[AMR][1000 genomes]
rs13387868	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13388861	0.83[AMR][1000 genomes]
rs13390027	0.80[AMR][1000 genomes]
rs13398669	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13398896	0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs13412509	0.80[AMR][1000 genomes]
rs13415730	0.80[AMR][1000 genomes]
rs13422158	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58277478	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60347662	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6706989	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6749548	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6757264	0.82[AMR][1000 genomes]
rs6760771	0.82[AMR][1000 genomes]
rs6761524	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72899995	0.85[AMR][1000 genomes]
rs72901828	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72901866	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7559840	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7567910	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7569221	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7569836	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7573396	0.83[AMR][1000 genomes]
rs7583557	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7594754	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7603152	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7607277	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9973780	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67790400-67798600	Weak transcription	Pancreas	Pancrea
2	chr2:67793600-67799400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:67793800-67799600	Weak transcription	Psoas Muscle	Psoas
4	chr2:67793800-67800400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:67793800-67803000	Weak transcription	Fetal Stomach	stomach
6	chr2:67794400-67798600	Weak transcription	Left Ventricle	heart
7	chr2:67794400-67798600	Weak transcription	NHLF	lung
8	chr2:67794600-67799000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:67794600-67799400	Weak transcription	HSMMtube	muscle
10	chr2:67794800-67799400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:67795400-67798600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:67795400-67799600	Weak transcription	NH-A	brain
13	chr2:67795600-67799800	Weak transcription	Osteobl	bone
14	chr2:67795600-67802800	Weak transcription	Fetal Lung	lung
15	chr2:67798000-67799800	Enhancers	Hela-S3	cervix
16	chr2:67798200-67799000	Enhancers	Stomach Mucosa	stomach
17	chr2:67798200-67799400	Weak transcription	NHDF-Ad	bronchial
18	chr2:67798200-67801800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:67798400-67799400	Enhancers	A549	lung

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