Variant report

Variant	rs6757264
Chromosome Location	chr2:67799637-67799638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10184721	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10190391	0.82[AMR][1000 genomes]
rs10204519	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11900117	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904407	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11904581	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13398896	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034036	0.86[ASN][1000 genomes]
rs6546321	0.86[ASN][1000 genomes]
rs6708296	0.86[ASN][1000 genomes]
rs6726761	0.86[ASN][1000 genomes]
rs6760771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899995	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559840	0.82[CEU][hapmap]
rs7568300	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7570412	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7573396	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579880	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7582772	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7589963	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603152	0.82[CEU][hapmap]
rs7604451	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7607277	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67793800-67800400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:67793800-67803000	Weak transcription	Fetal Stomach	stomach
3	chr2:67795600-67799800	Weak transcription	Osteobl	bone
4	chr2:67795600-67802800	Weak transcription	Fetal Lung	lung
5	chr2:67798000-67799800	Enhancers	Hela-S3	cervix
6	chr2:67798200-67801800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:67798600-67800200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:67798600-67800600	Enhancers	Left Ventricle	heart
9	chr2:67798600-67800600	Enhancers	Pancreas	Pancrea
10	chr2:67798600-67801800	Enhancers	HMEC	breast
11	chr2:67799000-67801800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:67799200-67801800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:67799400-67800400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr2:67799400-67800400	Enhancers	HSMMtube	muscle
15	chr2:67799400-67800600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:67799400-67800600	Flanking Active TSS	A549	lung
17	chr2:67799400-67801800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:67799400-67801800	Enhancers	Stomach Mucosa	stomach
19	chr2:67799400-67802000	Enhancers	NHDF-Ad	bronchial
20	chr2:67799600-67800400	Weak transcription	NHEK	skin
21	chr2:67799600-67800600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:67799600-67800600	Enhancers	Psoas Muscle	Psoas
23	chr2:67799600-67800800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr2:67799600-67801200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:67799600-67801800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:67799600-67801800	Enhancers	NH-A	brain
27	chr2:67799600-67801800	Enhancers	NHLF	lung

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